MICAS: Microsatellite Analysis Server 3.0

All Non-Coding Repeats of Borrelia burgdorferi JD1 plasmid JD1 cp32-9

Total Repeats: 134

S.No.	Genome ID	Motif	Iterations	Length	Start	End	A%	T%	G%	C%	Protein ID
1	NC_017397	TAA	2	6	46	51	66.67 %	33.33 %	0 %	0 %	Non-Coding
2	NC_017397	AGG	2	6	3359	3364	33.33 %	0 %	66.67 %	0 %	Non-Coding
3	NC_017397	GGA	2	6	3954	3959	33.33 %	0 %	66.67 %	0 %	Non-Coding
4	NC_017397	AGGG	2	8	8258	8265	25 %	0 %	75 %	0 %	Non-Coding
5	NC_017397	TA	3	6	15179	15184	50 %	50 %	0 %	0 %	Non-Coding
6	NC_017397	ATA	2	6	16532	16537	66.67 %	33.33 %	0 %	0 %	Non-Coding
7	NC_017397	CTA	2	6	17026	17031	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
8	NC_017397	ATA	2	6	17057	17062	66.67 %	33.33 %	0 %	0 %	Non-Coding
9	NC_017397	TAA	3	9	17108	17116	66.67 %	33.33 %	0 %	0 %	Non-Coding
10	NC_017397	A	7	7	17115	17121	100 %	0 %	0 %	0 %	Non-Coding
11	NC_017397	TGC	2	6	17614	17619	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
12	NC_017397	TCA	2	6	17627	17632	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
13	NC_017397	TAT	2	6	17739	17744	33.33 %	66.67 %	0 %	0 %	Non-Coding
14	NC_017397	T	6	6	17759	17764	0 %	100 %	0 %	0 %	Non-Coding
15	NC_017397	ATC	2	6	17848	17853	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
16	NC_017397	ATT	2	6	17857	17862	33.33 %	66.67 %	0 %	0 %	Non-Coding
17	NC_017397	T	6	6	17889	17894	0 %	100 %	0 %	0 %	Non-Coding
18	NC_017397	AAT	2	6	17896	17901	66.67 %	33.33 %	0 %	0 %	Non-Coding
19	NC_017397	TAT	2	6	17910	17915	33.33 %	66.67 %	0 %	0 %	Non-Coding
20	NC_017397	TGT	2	6	17920	17925	0 %	66.67 %	33.33 %	0 %	Non-Coding
21	NC_017397	CTT	2	6	17961	17966	0 %	66.67 %	0 %	33.33 %	Non-Coding
22	NC_017397	TAA	3	9	17978	17986	66.67 %	33.33 %	0 %	0 %	Non-Coding
23	NC_017397	T	8	8	17995	18002	0 %	100 %	0 %	0 %	Non-Coding
24	NC_017397	T	7	7	18044	18050	0 %	100 %	0 %	0 %	Non-Coding
25	NC_017397	T	6	6	18081	18086	0 %	100 %	0 %	0 %	Non-Coding
26	NC_017397	CTTG	2	8	18111	18118	0 %	50 %	25 %	25 %	Non-Coding
27	NC_017397	TTTTCG	2	12	18131	18142	0 %	66.67 %	16.67 %	16.67 %	Non-Coding
28	NC_017397	TAA	2	6	18444	18449	66.67 %	33.33 %	0 %	0 %	Non-Coding
29	NC_017397	ATT	2	6	18583	18588	33.33 %	66.67 %	0 %	0 %	Non-Coding
30	NC_017397	ATT	3	9	18601	18609	33.33 %	66.67 %	0 %	0 %	Non-Coding
31	NC_017397	TCC	2	6	18633	18638	0 %	33.33 %	0 %	66.67 %	Non-Coding
32	NC_017397	TAA	2	6	18651	18656	66.67 %	33.33 %	0 %	0 %	Non-Coding
33	NC_017397	TA	3	6	18664	18669	50 %	50 %	0 %	0 %	Non-Coding
34	NC_017397	CTT	2	6	18690	18695	0 %	66.67 %	0 %	33.33 %	Non-Coding
35	NC_017397	A	6	6	18699	18704	100 %	0 %	0 %	0 %	Non-Coding
36	NC_017397	A	6	6	18799	18804	100 %	0 %	0 %	0 %	Non-Coding
37	NC_017397	TAC	2	6	18816	18821	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
38	NC_017397	TAG	2	6	18827	18832	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
39	NC_017397	TAA	2	6	18906	18911	66.67 %	33.33 %	0 %	0 %	Non-Coding
40	NC_017397	T	7	7	18925	18931	0 %	100 %	0 %	0 %	Non-Coding
41	NC_017397	AAATA	2	10	21413	21422	80 %	20 %	0 %	0 %	Non-Coding
42	NC_017397	A	6	6	22064	22069	100 %	0 %	0 %	0 %	Non-Coding
43	NC_017397	TTC	2	6	22117	22122	0 %	66.67 %	0 %	33.33 %	Non-Coding
44	NC_017397	AAT	2	6	22160	22165	66.67 %	33.33 %	0 %	0 %	Non-Coding
45	NC_017397	AGAT	2	8	22213	22220	50 %	25 %	25 %	0 %	Non-Coding
46	NC_017397	AGA	2	6	22228	22233	66.67 %	0 %	33.33 %	0 %	Non-Coding
47	NC_017397	AGA	2	6	22261	22266	66.67 %	0 %	33.33 %	0 %	Non-Coding
48	NC_017397	ATAG	2	8	22281	22288	50 %	25 %	25 %	0 %	Non-Coding
49	NC_017397	ATAG	2	8	22314	22321	50 %	25 %	25 %	0 %	Non-Coding
50	NC_017397	AGAT	2	8	22333	22340	50 %	25 %	25 %	0 %	Non-Coding
51	NC_017397	AT	3	6	22364	22369	50 %	50 %	0 %	0 %	Non-Coding
52	NC_017397	ATAG	2	8	22386	22393	50 %	25 %	25 %	0 %	Non-Coding
53	NC_017397	A	6	6	22399	22404	100 %	0 %	0 %	0 %	Non-Coding
54	NC_017397	AT	3	6	22417	22422	50 %	50 %	0 %	0 %	Non-Coding
55	NC_017397	ATA	2	6	22432	22437	66.67 %	33.33 %	0 %	0 %	Non-Coding
56	NC_017397	AAAT	2	8	22438	22445	75 %	25 %	0 %	0 %	Non-Coding
57	NC_017397	A	6	6	22451	22456	100 %	0 %	0 %	0 %	Non-Coding
58	NC_017397	TAA	2	6	22495	22500	66.67 %	33.33 %	0 %	0 %	Non-Coding
59	NC_017397	ATT	2	6	22521	22526	33.33 %	66.67 %	0 %	0 %	Non-Coding
60	NC_017397	T	6	6	22547	22552	0 %	100 %	0 %	0 %	Non-Coding
61	NC_017397	TAA	2	6	22582	22587	66.67 %	33.33 %	0 %	0 %	Non-Coding
62	NC_017397	TA	3	6	22593	22598	50 %	50 %	0 %	0 %	Non-Coding
63	NC_017397	TTTTA	2	10	22652	22661	20 %	80 %	0 %	0 %	Non-Coding
64	NC_017397	TTG	2	6	22705	22710	0 %	66.67 %	33.33 %	0 %	Non-Coding
65	NC_017397	AAT	2	6	22724	22729	66.67 %	33.33 %	0 %	0 %	Non-Coding
66	NC_017397	TAA	2	6	22733	22738	66.67 %	33.33 %	0 %	0 %	Non-Coding
67	NC_017397	TTA	2	6	22762	22767	33.33 %	66.67 %	0 %	0 %	Non-Coding
68	NC_017397	TAA	2	6	22788	22793	66.67 %	33.33 %	0 %	0 %	Non-Coding
69	NC_017397	ATTA	2	8	22801	22808	50 %	50 %	0 %	0 %	Non-Coding
70	NC_017397	TAA	2	6	22809	22814	66.67 %	33.33 %	0 %	0 %	Non-Coding
71	NC_017397	AAT	2	6	22836	22841	66.67 %	33.33 %	0 %	0 %	Non-Coding
72	NC_017397	ATATGT	2	12	22853	22864	33.33 %	50 %	16.67 %	0 %	Non-Coding
73	NC_017397	A	7	7	22871	22877	100 %	0 %	0 %	0 %	Non-Coding
74	NC_017397	A	7	7	22890	22896	100 %	0 %	0 %	0 %	Non-Coding
75	NC_017397	T	7	7	22956	22962	0 %	100 %	0 %	0 %	Non-Coding
76	NC_017397	A	6	6	22977	22982	100 %	0 %	0 %	0 %	Non-Coding
77	NC_017397	TA	3	6	23004	23009	50 %	50 %	0 %	0 %	Non-Coding
78	NC_017397	TATT	2	8	23014	23021	25 %	75 %	0 %	0 %	Non-Coding
79	NC_017397	GGA	2	6	23035	23040	33.33 %	0 %	66.67 %	0 %	Non-Coding
80	NC_017397	AAT	3	9	23064	23072	66.67 %	33.33 %	0 %	0 %	Non-Coding
81	NC_017397	CAA	2	6	23115	23120	66.67 %	0 %	0 %	33.33 %	Non-Coding
82	NC_017397	TCT	2	6	23154	23159	0 %	66.67 %	0 %	33.33 %	Non-Coding
83	NC_017397	A	6	6	23170	23175	100 %	0 %	0 %	0 %	Non-Coding
84	NC_017397	TAAG	2	8	23182	23189	50 %	25 %	25 %	0 %	Non-Coding
85	NC_017397	AGT	2	6	23214	23219	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
86	NC_017397	TTG	2	6	23311	23316	0 %	66.67 %	33.33 %	0 %	Non-Coding
87	NC_017397	AG	3	6	23436	23441	50 %	0 %	50 %	0 %	Non-Coding
88	NC_017397	ATA	2	6	23461	23466	66.67 %	33.33 %	0 %	0 %	Non-Coding
89	NC_017397	TA	3	6	23476	23481	50 %	50 %	0 %	0 %	Non-Coding
90	NC_017397	AAAT	2	8	23483	23490	75 %	25 %	0 %	0 %	Non-Coding
91	NC_017397	ATT	2	6	23515	23520	33.33 %	66.67 %	0 %	0 %	Non-Coding
92	NC_017397	A	7	7	23523	23529	100 %	0 %	0 %	0 %	Non-Coding
93	NC_017397	CAA	2	6	23557	23562	66.67 %	0 %	0 %	33.33 %	Non-Coding
94	NC_017397	TAA	3	9	23579	23587	66.67 %	33.33 %	0 %	0 %	Non-Coding
95	NC_017397	AGT	2	6	23637	23642	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
96	NC_017397	T	6	6	23672	23677	0 %	100 %	0 %	0 %	Non-Coding
97	NC_017397	AGT	2	6	23679	23684	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
98	NC_017397	T	6	6	23690	23695	0 %	100 %	0 %	0 %	Non-Coding
99	NC_017397	TGC	2	6	23771	23776	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
100	NC_017397	TAA	2	6	23837	23842	66.67 %	33.33 %	0 %	0 %	Non-Coding
101	NC_017397	A	7	7	23867	23873	100 %	0 %	0 %	0 %	Non-Coding
102	NC_017397	AG	3	6	23892	23897	50 %	0 %	50 %	0 %	Non-Coding
103	NC_017397	TTG	2	6	23944	23949	0 %	66.67 %	33.33 %	0 %	Non-Coding
104	NC_017397	TAG	2	6	23956	23961	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
105	NC_017397	GAGTT	2	10	23986	23995	20 %	40 %	40 %	0 %	Non-Coding
106	NC_017397	AATC	2	8	24054	24061	50 %	25 %	0 %	25 %	Non-Coding
107	NC_017397	A	7	7	24138	24144	100 %	0 %	0 %	0 %	Non-Coding
108	NC_017397	AGC	2	6	24214	24219	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
109	NC_017397	AGAT	2	8	24278	24285	50 %	25 %	25 %	0 %	Non-Coding
110	NC_017397	CAA	2	6	24301	24306	66.67 %	0 %	0 %	33.33 %	Non-Coding
111	NC_017397	AAT	2	6	24345	24350	66.67 %	33.33 %	0 %	0 %	Non-Coding
112	NC_017397	A	6	6	24380	24385	100 %	0 %	0 %	0 %	Non-Coding
113	NC_017397	AAT	2	6	24393	24398	66.67 %	33.33 %	0 %	0 %	Non-Coding
114	NC_017397	AAGTAA	2	12	25662	25673	66.67 %	16.67 %	16.67 %	0 %	Non-Coding
115	NC_017397	TAA	2	6	25682	25687	66.67 %	33.33 %	0 %	0 %	Non-Coding
116	NC_017397	AGA	2	6	25787	25792	66.67 %	0 %	33.33 %	0 %	Non-Coding
117	NC_017397	AAGA	2	8	25816	25823	75 %	0 %	25 %	0 %	Non-Coding
118	NC_017397	AT	3	6	25840	25845	50 %	50 %	0 %	0 %	Non-Coding
119	NC_017397	AATTT	2	10	25860	25869	40 %	60 %	0 %	0 %	Non-Coding
120	NC_017397	GA	3	6	25915	25920	50 %	0 %	50 %	0 %	Non-Coding
121	NC_017397	TA	3	6	25987	25992	50 %	50 %	0 %	0 %	Non-Coding
122	NC_017397	ATT	2	6	26015	26020	33.33 %	66.67 %	0 %	0 %	Non-Coding
123	NC_017397	TGT	2	6	26024	26029	0 %	66.67 %	33.33 %	0 %	Non-Coding
124	NC_017397	AAT	2	6	26714	26719	66.67 %	33.33 %	0 %	0 %	Non-Coding
125	NC_017397	A	6	6	27933	27938	100 %	0 %	0 %	0 %	Non-Coding
126	NC_017397	GTT	2	6	27947	27952	0 %	66.67 %	33.33 %	0 %	Non-Coding
127	NC_017397	T	7	7	27954	27960	0 %	100 %	0 %	0 %	Non-Coding
128	NC_017397	TTCA	2	8	28006	28013	25 %	50 %	0 %	25 %	Non-Coding
129	NC_017397	TTTA	2	8	28046	28053	25 %	75 %	0 %	0 %	Non-Coding
130	NC_017397	TA	3	6	28052	28057	50 %	50 %	0 %	0 %	Non-Coding
131	NC_017397	CT	3	6	28058	28063	0 %	50 %	0 %	50 %	Non-Coding
132	NC_017397	TAA	2	6	28649	28654	66.67 %	33.33 %	0 %	0 %	Non-Coding
133	NC_017397	AATA	2	8	28660	28667	75 %	25 %	0 %	0 %	Non-Coding
134	NC_017397	ATA	2	6	28697	28702	66.67 %	33.33 %	0 %	0 %	Non-Coding

©2012. Centre for DNA Fingerprinting & Diagnostics (CDFD), Hyderabad.